Fri Apr 01, 2011 10:00 pm
function [label, model, llh] = emgm(X, init)
% EM algorithm for Gaussian mixture model
% Written by Mo Chen ([email protected]). March 2009.
%% initialization
fprintf('EM for Gaussian mixture: running ... ');
R = initialization(X,init);
tol = 1e-6;
maxiter = 500;
llh = -inf(1,maxiter);
converged = false;
t = 1;
while ~converged && t < maxiter
t = t+1;
model = maximization(X,R);
[R, llh(t)] = expectation(X,model);
converged = llh(t)-llh(t-1) < tol*abs(llh(t));
end
[~,label(1,:)] = max(R,[],2);
llh = llh(2:t);
if converged
fprintf('converged in %d steps.\n',t);
else
fprintf('not converged in %d steps.\n',maxiter);
end
function R = initialization(X, init)
[d,n] = size(X);
if isstruct(init) % initialize with model
R = expectation(X,init);
elseif length(init) == 1 % random initialization
k = init;
idx = randsample(n,k);
m = X(:,idx);
[~,label] = max(bsxfun(@minus,m'*X,sum(m.^2,1)'/2));
while k ~= unique(label)
idx = randsample(n,k);
m = X(:,idx);
[~,label] = max(bsxfun(@minus,m'*X,sum(m.^2,1)'/2));
end
R = full(sparse(1:n,label,1,n,k,n));
elseif size(init,1) == 1 && size(init,2) == n % initialize with labels
label = init;
k = max(label);
R = full(sparse(1:n,label,1,n,k,n));
elseif size(init,1) == d && size(init,2) > 1 %initialize with only centers
k = size(init,2);
m = init;
[~,label] = max(bsxfun(@minus,m'*X,sum(m.^2,1)'/2));
R = full(sparse(1:n,label,1,n,k,n));
else
error('ERROR: init is not valid.');
end
function [R, llh] = expectation(X, model)
mu = model.mu;
Sigma = model.Sigma;
w = model.weight;
n = size(X,2);
k = size(mu,2);
R = zeros(n,k);
for i = 1:k
R(:,i) = loggausspdf(X,mu(:,i),Sigma(:,:,i));
end
R = bsxfun(@plus,R,log(w));
T = logsumexp(R,2);
llh = sum(T)/n; % loglikelihood
R = bsxfun(@minus,R,T);
R = exp(R);
function model = maximization(X, R)
[d,n] = size(X);
k = size(R,2);
sigma0 = eye(d)*(1e-6); % regularization factor for covariance
s = sum(R,1);
w = s/n;
mu = bsxfun(@rdivide, X*R, s);
Sigma = zeros(d,d,k);
for i = 1:k
Xo = bsxfun(@minus,X,mu(:,i));
Xo = bsxfun(@times,Xo,sqrt(R(:,i)'));
Sigma(:,:,i) = (Xo*Xo'+sigma0)/s(i);
end
model.mu = mu;
model.Sigma = Sigma;
model.weight = w;Codemiles.com is a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for sites to earn advertising fees by advertising and linking to Amazon.com
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